Publications
(2000).
Algorithms for Optical Mapping.
Proceedings of the Second Annual International Conference on Computational Molecular Biology. 117-124.
(1998). CLICK and EXPANDER: A System for Clustering and Visualizing Gene Expression Data.
Bioinformatics. 1787-1799.
(2003).
(2004). Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification and Population Stratification.
INFORMS Journal on Computing.
(2004). Detecting Disease-Specific Dysregulated Pathways Via Analysis of Clinical Expression Profiles.
Proceedings of 12th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2008). 347-359.
(2008). Detecting Excess Radical Replacements in Phylogenetic Trees.
Gene. 127-135.
(2003). A family of simplex variants solving an m*d linear program in expected number of pivot steps depending on d only.
Mathematics of Operations Research. 11(4), 570-590.
(1986).
(2014).
(2003).
Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
(2004). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of RECOMB 2004. 282-289.
(2004). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Journal of Computational Biology. 12(6), 835-846.
(2005).
(2003). Identification of Protein Complexes by Comparative Analysis of Yeast and Bacterial Protein Interaction Data.
Proceedings of the 8th Annual International Conference on Research in Computational Molecular Biology (RECOMB'04). 282-289.
(2004). Idetifying Blocks and Sub-Populations in Noisy SNP Data.
Proceedings of the Third Workshop on Algorithms in Bioinformatics (WABI'03). 303-319.
(2003). Incomplete Directed Perfect Phylogeny.
SIAM Journal on Computing. 33(3), 590-607.
(2004). Increasing the Power of Association Studies by Imputation-Based Sparse Tag SNP Selection.
Communications in Information and Systems. 9(3), 269-282.
(2009).
(2004).
A Randomization Test for Controlling Population Stratification in Whole-Genome Association Studies.
American Journal of Human Genetics. 81(5), 895-905.
(2007). Reconstructing Chain Functions in Genetic Networks.
Proceedings of the Ninth Pacific Symposium on Biocomputing (PSB'04). 498-509.
(2004). The Restriction Scaffold Problem.
Proceedings of the Sixth Annual International Conference on Research in Computational Molecular Biology (RECOMB'02).
(2002). The Restriction Scaffold Problem.
Journal of Computational Biology. 10(3-4), 385-398.
(2003). Revealing Modularity and Organization in the Yeast Molecular Network by Integrated Analysis of Highly Heterogeneous Genome-Wide Data.
Proceedings of the National Academy of Sciences of the United States of America. 101(9), 2981-2986.
(2004).